Disease: Celiac Disease
Source: ALL
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs2476601
AP4B1-AS1 ; PTPN22
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93 121
rs2501432
CNR2
0.716 0.480 1 23875430 missense variant T/C;G snv 0.62 16
rs2305764
MYO9B
0.776 0.360 19 17203024 non coding transcript exon variant G/A snv 0.52 0.50 10
rs763361
CD226
0.689 0.520 18 69864406 missense variant T/A;C snv 4.0E-06; 0.52 21
rs5498
ICAM4 ; ICAM1
0.531 0.760 19 10285007 missense variant A/G snv 0.44 0.37 99
rs231775
CTLA4
0.504 0.720 2 203867991 missense variant A/G;T snv 0.42; 4.0E-06 115
rs2043211
CARD8
0.653 0.480 19 48234449 missense variant A/T snv 0.33 0.29 29
rs11066188
HECTD4
0.851 0.320 12 112172910 intron variant G/A;C snv 0.30; 4.1E-06 7
rs13397
MIR3202-2 ; TMEM187
0.925 0.200 X 153982797 synonymous variant G/A snv 0.27 0.15 2
rs1893592
UBASH3A
0.742 0.280 21 42434957 missense variant A/C;G snv 0.27; 8.0E-06 12
rs1800629
TNF
0.472 0.920 6 31575254 upstream gene variant G/A snv 0.12 0.14 169
rs1799945
LOC108783645 ; HFE
0.452 0.760 6 26090951 missense variant C/G;T snv 0.11 0.10 226
rs1799969
ICAM1
0.637 0.560 19 10284116 missense variant G/A snv 0.11 9.3E-02 38
rs3743930
MEFV
0.611 0.720 16 3254626 missense variant C/G;T snv 7.1E-02 43
rs4986790
TLR4
0.438 0.800 9 117713024 missense variant A/G;T snv 6.1E-02; 4.0E-06 223
rs4986791
TLR4
0.456 0.840 9 117713324 missense variant C/T snv 5.7E-02 4.9E-02 182
rs11209026
IL23R
0.597 0.680 1 67240275 missense variant G/A snv 4.2E-02 4.6E-02 46
rs35829419
NLRP3
0.689 0.560 1 247425556 missense variant C/A snv 3.9E-02 3.3E-02 23
rs17849502
NCF2 ; SMG7
0.827 0.240 1 183563445 missense variant G/A;C;T snv 4.0E-06; 4.0E-06; 3.4E-02 5
rs1800562
LOC108783645 ; HFE
0.435 0.880 6 26092913 missense variant G/A snv 3.3E-02 3.8E-02 262
rs1217691063
MTHFR
0.330 0.920 1 11796309 missense variant A/G snv 4.0E-06 7.0E-06 614
rs10203477
LINC01185
0.925 0.200 2 60877850 intron variant A/T snv 0.48 2
rs10754558
NLRP3
0.695 0.480 1 247448734 3 prime UTR variant G/C;T snv 20
rs11123810
AFF3
0.925 0.200 2 100142823 intron variant T/C snv 0.37 2
rs11217040 0.925 0.200 11 118809939 regulatory region variant C/A snv 0.19 2